Using locally cached version: ./GSE1906_series_matrix.txt.gz
Timeout was reached: [] Operation timed out after 120004 milliseconds with 1506764 bytes receivedFile stored at:
./GPL81.soft.gz
Error in downloadFile(myurl, destfile, mode = mode, quiet = TRUE) :
Failed to download ./GPL81.soft.gz!
这个报错怎么解决
检查能不能进GEO数据库,排除网络问题,再看看代码有无错误,最后实在不行再在GEO手动下载
# BiocManager::install("GEOquery")
library(GEOquery)
eSet <- getGEO("GSE1906", destdir = ".", getGPL = T) #下载对应GSE数据
exprSet = exprs(eSet[[1]])#表达量矩阵
fdata = fData(eSet[[1]])#平台信息
pdata = pData(eSet[[1]]) #表型信息