Ok, not sure if this question fits here on SO or not. But Ill ask anyway. I know Zend is a MVC, and with that almost all MVC's Zend or otherwise that I have worked with or installed all come with a load of files and the core directory structure you'd expect. Example the company I work for currently uses Zend, and them like all other companies I have worked for that use Zend as well all share a similar Folder Structure:
IE:
application
config
controllers
data
library
model
views
webroot
However going to the Zend site, downloading the ZF2 package I unpack it I see only a couple examples of stuff built within Zend. But nothing pertaining to a structure like that, then I find out I have to do some Skeleton build or whatever, and I try that, and still see nothing similar. So with that my question is, am I doing something wrong? Or am I grabbing the wrong stuff from there site? Ideas?
The file structure you've given is roughly the standard file structure for a ZF 1 app. If you check the ZF1 manual you'll see the same file structure there: http://framework.zend.com/manual/1.12/en/project-structure.project.html. ZF2 (the current version) works a bit differently.
The directory structure of ZF2 is different from that of ZF1. The major difference is that a ZF2 application is organised in modules. Each module basically has its own directories for the models, views and controllers.
The quickest way to get the "correct" file structure probably is to start building your app on top of the ZendSkeletonApplication. Also looking at other modules (for example at the ZF2 modules directory) might help to understand the directory structure of ZF2 better. As an example consider the ZfcUser module: It contains a simple user authentication module with a controller, the data model and the views.