RGI版本是6.0.2,系统是macOS13.4.1。启动终端运行rgi main -i SAMD00245602.fa -o SAMD00245602 --clean出现以下报错,是因为什么?
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 116, in spawn_main
exitcode = _main(fd, parent_sentinel)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 125, in _main
prepare(preparation_data)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 236, in prepare
_fixup_main_from_path(data['init_main_from_path'])
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 287, in _fixup_main_from_path
main_content = runpy.run_path(main_path,
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/runpy.py", line 265, in run_path
return _run_module_code(code, init_globals, run_name,
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/runpy.py", line 97, in _run_module_code
_run_code(code, mod_globals, init_globals,
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/Users/bingfengchen/miniconda3/envs/rgi/bin/rgi", line 4, in <module>
MainBase()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 83, in __init__
getattr(self, args.command)()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 88, in main
self.main_run(args)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 128, in main_run
rgi_obj.run()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/RGI.py", line 255, in run
self.filter_process()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/RGI.py", line 387, in filter_process
filter_obj.run()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/Filter.py", line 174, in run
self.process_xml_file()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/Filter.py", line 102, in process_xml_file
model_thread.start()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/process.py", line 121, in start
self._popen = self._Popen(self)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/context.py", line 224, in _Popen
return _default_context.get_context().Process._Popen(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/context.py", line 284, in _Popen
return Popen(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/popen_spawn_posix.py", line 32, in __init__
super().__init__(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/popen_fork.py", line 19, in __init__
self._launch(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/popen_spawn_posix.py", line 42, in _launch
prep_data = spawn.get_preparation_data(process_obj._name)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 154, in get_preparation_data
_check_not_importing_main()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 134, in _check_not_importing_main
raise RuntimeError('''
RuntimeError:
An attempt has been made to start a new process before the
current process has finished its bootstrapping phase.
This probably means that you are not using fork to start your
child processes and you have forgotten to use the proper idiom
in the main module:
if __name__ == '__main__':
freeze_support()
...
The "freeze_support()" line can be omitted if the program
is not going to be frozen to produce an executable.
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 116, in spawn_main
exitcode = _main(fd, parent_sentinel)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 125, in _main
prepare(preparation_data)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 236, in prepare
_fixup_main_from_path(data['init_main_from_path'])
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 287, in _fixup_main_from_path
main_content = runpy.run_path(main_path,
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/runpy.py", line 265, in run_path
return _run_module_code(code, init_globals, run_name,
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/runpy.py", line 97, in _run_module_code
_run_code(code, mod_globals, init_globals,
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/Users/bingfengchen/miniconda3/envs/rgi/bin/rgi", line 4, in <module>
MainBase()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 83, in __init__
getattr(self, args.command)()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 88, in main
self.main_run(args)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 128, in main_run
rgi_obj.run()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/RGI.py", line 255, in run
self.filter_process()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/RGI.py", line 387, in filter_process
filter_obj.run()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/Filter.py", line 174, in run
self.process_xml_file()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/Filter.py", line 102, in process_xml_file
model_thread.start()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/process.py", line 121, in start
self._popen = self._Popen(self)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/context.py", line 224, in _Popen
return _default_context.get_context().Process._Popen(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/context.py", line 284, in _Popen
return Popen(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/popen_spawn_posix.py", line 32, in __init__
super().__init__(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/popen_fork.py", line 19, in __init__
self._launch(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/popen_spawn_posix.py", line 42, in _launch
prep_data = spawn.get_preparation_data(process_obj._name)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 154, in get_preparation_data
_check_not_importing_main()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 134, in _check_not_importing_main
raise RuntimeError('''
RuntimeError:
An attempt has been made to start a new process before the
current process has finished its bootstrapping phase.
This probably means that you are not using fork to start your
child processes and you have forgotten to use the proper idiom
in the main module:
if __name__ == '__main__':
freeze_support()
...
The "freeze_support()" line can be omitted if the program
is not going to be frozen to produce an executable.
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 116, in spawn_main
exitcode = _main(fd, parent_sentinel)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 125, in _main
prepare(preparation_data)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 236, in prepare
_fixup_main_from_path(data['init_main_from_path'])
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 287, in _fixup_main_from_path
main_content = runpy.run_path(main_path,
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/runpy.py", line 265, in run_path
return _run_module_code(code, init_globals, run_name,
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/runpy.py", line 97, in _run_module_code
_run_code(code, mod_globals, init_globals,
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/Users/bingfengchen/miniconda3/envs/rgi/bin/rgi", line 4, in <module>
MainBase()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 83, in __init__
getattr(self, args.command)()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 88, in main
self.main_run(args)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 128, in main_run
rgi_obj.run()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/RGI.py", line 255, in run
self.filter_process()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/RGI.py", line 387, in filter_process
filter_obj.run()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/Filter.py", line 174, in run
self.process_xml_file()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/site-packages/app/Filter.py", line 102, in process_xml_file
model_thread.start()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/process.py", line 121, in start
self._popen = self._Popen(self)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/context.py", line 224, in _Popen
return _default_context.get_context().Process._Popen(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/context.py", line 284, in _Popen
return Popen(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/popen_spawn_posix.py", line 32, in __init__
super().__init__(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/popen_fork.py", line 19, in __init__
self._launch(process_obj)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/popen_spawn_posix.py", line 42, in _launch
prep_data = spawn.get_preparation_data(process_obj._name)
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 154, in get_preparation_data
_check_not_importing_main()
File "/Users/bingfengchen/miniconda3/envs/rgi/lib/python3.8/multiprocessing/spawn.py", line 134, in _check_not_importing_main
raise RuntimeError('''
RuntimeError:
An attempt has been made to start a new process before the
current process has finished its bootstrapping phase.
This probably means that you are not using fork to start your
child processes and you have forgotten to use the proper idiom
in the main module:
if __name__ == '__main__':
freeze_support()
...
The "freeze_support()" line can be omitted if the program
is not going to be frozen to produce an executable.
Here are a few tips for falling asleep more quickly: