代码如下:
root@scrna:/mnt/SRR# prefetch SRR11940383
2022-05-25T12:42:10 prefetch.2.10.9: 1) Downloading 'SRR11940383'.
2022-05-25T12:42:10 prefetch.2.10.9: Downloading via HTTPS
2022-05-25T13:00:14 prefetch.2.10.9: HTTPS download succeed
2022-05-25T13:00:40 prefetch.2.10.9: 'SRR11940383' is valid
2022-05-25T13:00:40 prefetch.2.10.9: 1) 'SRR11940383' was downloaded successfully
2022-05-25T13:03:19 prefetch.2.10.9: 'SRR11940383' has 112 unresolved dependencie
2022-05-25T13:03:19 prefetch.2.10.9: 2) Downloading 'ncbi-acc:GL000008.2?vdb-ctx=refseq'
2022-05-25T13:03:19 prefetch.2.10.9: Downloading via HTTPS
2022-05-25T13:03:26 prefetch.2.10.9: HTTPS download succeed
2022-05-25T13:03:26 prefetch.2.10.9: 2) 'ncbi-acc:GL000008.2?vdb-ctx=refseq' was downloaded successfully
2022-05-25T13:03:26 prefetch.2.10.9: 3) Downloading 'ncbi-acc:GL000009.2?vdb-ctx=refseq'
(接下来全是这样子重复
换一个文件尝试,下载SRR11940382,也报出来这个
考虑是不是之前sratoolkit的路径设置的错误,尝试了各种而样的,都列在下边(刚接触linux系统第二天,疯狂试错见笑了)
echo 'export export PATH=$PATH:/root/sratoolkit/sratoolkit.2.10.9-ubuntu64/bin' >> ~/.bash_profile
echo 'export export PATH=$HOME:/root/sratoolkit/sratoolkit.2.10.9-ubuntu64/bin' >> ~/.bash_profile
echo 'export export PATH=$PATH:/sratoolkit/sratoolkit.2.10.9-ubuntu64/bin' >> ~/.bash_profile
echo 'export export PATH=$HOME:/sratoolkit/sratoolkit.2.10.9-ubuntu64/bin' >> ~/.bash_profile
然后安装放置sratoolkit的地址是这个:/root/sratoolkit/
想要解决这个问题,谢谢
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