[Thu Feb 10 00:24:51 CST 2022] picard.sam.SortSam done. Elapsed time: 50.58 minutes.
Runtime.totalMemory()=11376525312
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
Exception in thread "main" htsjdk.samtools.util.RuntimeIOException: Problem writing temporary file file:///tmp/root/sortingcollection.7905176850546951028.tmp. Try setting TMP_DIR to a file system with lots of space.
at htsjdk.samtools.util.SortingCollection.spillToDisk(SortingCollection.java:260)
at htsjdk.samtools.util.SortingCollection.add(SortingCollection.java:182)
at htsjdk.samtools.SAMFileWriterImpl.addAlignment(SAMFileWriterImpl.java:187)
at picard.sam.SortSam.doWork(SortSam.java:163)
at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:308)
at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:103)
at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:113)
Caused by: htsjdk.samtools.util.RuntimeIOException: Write error; BinaryCodec in writemode; streamed file (filename not available)
运行失败
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