cfg.hhlib = '/home/jia/anaconda3/pkgs/hhsuite-3.3.0-py37pl526hfa133b6_0'
cfg.database = '/mnt/sharefile/jbl/UniRef30'
comm = ('export HHLIB=' + cfg.hhlib + ' &&'
+ 'export PATH="$PATH:' + cfg.hhlib + '/bin:' + cfg.hhlib
+ '/scripts" && ' + cfg.hhlib + '/bin/hhblits -i '
+ tmp_dir + '/' + file + ' -n 3 -e 0.001 -d ' + cfg.database
+ ' -cpu 6 -ohhm ' + HMM_DIR + '/' + name + '.ohhm -diff inf -id 99 -cov 50')
os.system(comm)
- 10:34:03.719 INFO: Search results will be written to /mnt/sharefile/jbl/AHs/example/features/HMM/1CCMA/1CCMA.hhr
- 10:34:03.720 ERROR: In /opt/conda/conda-bld/hhsuite_1598678489476/work/src/ffindexdatabase.cpp:11: FFindexDatabase:
- 10:34:03.720 ERROR: could not open file '/mnt/sharefile/jbl/UniRef30_cs219.ffdata'
I tried chmod a+r /mnt/sharefile/jbl/UniRef30 and chmod 751 {file name} or for i in $( ls /mnt/sharefile/jbl/UniRef30 ); do echo chmod 754 $i ; done but none of them worked How do you suggest I solve it?? Thanks in advance
could not open file '/mnt/sharefile/jbl/UniRef30_cs219.ffdata'
你这个文件名有问题吧,你可以把全部路径打上
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您好,这个问题解决了吗